Add Statistics¶

addStatistics()

Adds genes and cells statistics to the Giotto object.

addStatistics(
    gobject,
    expression_values = c("normalized", "scaled", "custom"),
    detection_threshold = 0,
    return_gobject = TRUE
)

Arguments¶

gobject	giotto object
expression_values	expression values to use
detection_threshold	detection threshold to consider a gene detected
return_gobject	boolean: return giotto object (default = TRUE)

Value¶

Giotto object if return_gobject = TRUE. Otherwise it returns a list with results.

Details¶

See addGeneStatistics and addCellStatistics

Examples¶

data(mini_giotto_single_cell)

updated_giotto_object = addStatistics(mini_giotto_single_cell)
#>
#>  gene statistics has already been applied once, will be overwritten
#>
#>  cells statistics has already been applied once, will be overwritten