Compute Highly Variable Genes

anndataToGiotto()

Compute highly variable genes.

anndataToGiotto(
    anndata_path,
    metadata_cols = c("total_counts", "pct_counts_mt"),
    instructions = NULL,
    ...
)

Arguments

anndata_path	path to the .h5ad file
metadata_cols	metadata columns to include
instructions	giotto instructions
…	additional parameters to createGiottoObject()

Value

A Giotto object.

Details

Converts a .h5ad file into a Giotto object.

Important

Function in beta.