Create Barplot from Cell-Cell Proximity Score

cellProximityBarplot()

Create barplot from cell-cell proximity scores.

cellProximityBarplot(
    gobject,
    CPscore,
    min_orig_ints = 5,
    min_sim_ints = 5,
    p_val = 0.05,
    show_plot = NA,
    return_plot = NA,
    save_plot = NA,
    save_param = list(),
    default_save_name = "cellProximityBarplot"
)

Arguments

gobject	giotto object
CPscore	CPscore, output from cellProximityEnrichment()
min_orig_ints	filter on minimum original cell-cell interactions
min_sim_ints	filter on minimum simulated cell-cell interactions
p_val	p-value
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters from all_plots_save_function()
default_save_name	default save name for saving, don’t change, change save_name in save_param

Value

A ggplot barplot.

Details

This function creates a barplot that shows the spatial proximity enrichment or depletion of cell type pairs.