Create Giotto Instructions¶

createGiottoInstructions()

Function to set global instructions for Giotto functions.

createGiottoInstructions(
    python_path = NULL,
    show_plot = NULL,
    return_plot = NULL,
    save_plot = NULL,
    save_dir = NULL,
    plot_format = NULL,
    dpi = NULL,
    units = NULL,
    height = NULL,
    width = NULL,
    is_docker = FALSE
)

Arguements¶

python_path	path to python binary to use
show_plot	print plot to console, default = TRUE
return_plot	return plot as object, default = TRUE
save_plot	automatically save plot, dafault = FALSE
save_dir	path to directory where to save plots
plot_format	format of plots (defaults to png)
dpi	resolution for raster images
units	units of format (defaults to in)
height	height of plots
width	width of plots
is_docker	using docker implementation of Giotto (defaults to FALSE)

Value¶

Named vector with Giotto instructions