Get the Spatial Dataset

getSpatialDataset()

This package will automatically download the spatial locations and expression matrix for the chosen dataset. These files are already in the right format to create a Giotto object. If wget is installed on your machine, you can add ``’method = wget’`` to the parameters to download files faster.

getSpatialDataset(
    dataset = c("ST_OB1", "ST_OB2", "codex_spleen", "cycif_PDAC", "starmap_3D_cortex",
        "osmfish_SS_cortex", "merfish_preoptic", "seqfish_SS_cortex", "seqfish_OB",
        "slideseq_cerebellum"),
    directory = getwd(),
    ... )

Arguments

dataset	dataset to download
directory	directory to save the data to
…	additional parameters to download.file