Plot Comparison of Ligand-Receptor Rankings

plotRecovery()

Plots recovery plot to compare ligand-receptor rankings from spatial and expression information.

plotRecovery(
    gobject,
    combCC,
    expr_rnk_column = "exprPI_rnk",
    spat_rnk_column = "spatPI_rnk",
    ground_truth = c("spatial", "expression"),
    show_plot = NA,
    return_plot = NA,
    save_plot = NA,
    save_param = list(),
    default_save_name = "plotRecovery"
)

Arguments

gobject	giotto object
combCC	combined communication scores from combCCcom()
expr_rnk_column	column with expression rank information to use
spat_rnk_column	column with spatial rank information to use
ground_truth	what to consider as ground truth (default: spatial)
show_plot	show plots
return_plot	return plotting object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters from all_plots_save_function()
default_save_name	default save name for saving, don’t change, change save_name in save_param

Value

A ggplot.