Subset Giotto Locations

subsetGiottoLocs()

Subsets Giotto object based on spatial locations.

subsetGiottoLocs(
    gobject,
    x_max = NULL,
     x_min = NULL,
    y_max = NULL,
    y_min = NULL,
    z_max = NULL,
    z_min = NULL,
    return_gobject = T,
    verbose = FALSE
)

Arguments

gobject

giotto object

x_max

maximum x-coordinate

x_min

minimum x-coordinate

y_max

maximum y-coordinate

y_min

minimum y-coordinate

z_max

maximum z-coordinate

z_min

minimum z-coordinate

return_gobject

return Giotto object

verbose

be verbose

Value

Giotto Object

Details

If return_gobject = FALSE, then a filtered combined metadata data.table will be returned

Examples

# \donttest{

data(mini_giotto_single_cell)

# spatial plot
spatPlot(mini_giotto_single_cell)
subsetGiottoLocs subsetGiottoLocs 
# subset giotto object based on spatial locations
subset_obj = subsetGiottoLocs(mini_giotto_single_cell,
x_max = 1500, x_min = 1000,
y_max = -500, y_min = -1000)
# spatial plot of subset giotto object
spatPlot(subset_obj)
# }
subsetGiottoLocs subsetGiottoLocs