Compute Spatially Variable Genes With Trendsceek¶

Compute spatial variable genes with trendsceek method.

trendSceek(
    gobject,
    expression_values = c("normalized", "raw"),
    subset_genes = NULL,
    nrand = 100,
    ncores = 8,
    ...
)

Arguments¶

gobject	Giotto object
expression_values	gene expression values to use
subset_genes	subset of genes to run trendsceek on
nrand	An integer specifying the number of random resamplings of the mark distribution as to create the null-distribution.
ncores	An integer specifying the number of cores to be used by BiocParallel
…	Additional parameters to the `trendsceek_test` function

A data.frame with trendsceek spatial genes results.

This function is a wrapper for the trendsceek_test method implemented in the trendsceek package