Visualize Cells And Gene Expression Virtually (3D)

crossSectionGenePlot3D()

Visualize cells and gene expression in a virtual cross section according to spatial coordinates.

crossSectionGenePlot3D(
    gobject,
    crossSection_obj = NULL,
    name = NULL,
    spatial_network_name = "Delaunay_network",
    other_cell_color = alpha("lightgrey", 0),
    default_save_name = "crossSectionGenePlot3D",
    ...
)

Arguments

gobject	giotto object
crossSection_obj	cross section object as alternative input. default = NULL.
name	name of virtual cross section to use
spatial_network_name	name of spatial network to use
other_cell_color	color of cells outside the cross section. default = transparent.
default_save_name	default save name for saving, don’t change, change save_name in save_param
…	parameters for spatGenePlot3D()

Value

A ggplot.

Details

Description of parameters …