Visualize Cells In A Virtual Cross Section (3D)

crossSectionPlot3D()

Visualize cells in a virtual cross section according to spatial coordinates.

crossSectionPlot3D(
    gobject,
    crossSection_obj = NULL,
    name = NULL,
    spatial_network_name = "Delaunay_network",
    show_other_cells = T,
    other_cell_color = alpha("lightgrey", 0),
    default_save_name = "crossSection3D",
    ...
)

Arguments

gobject	giotto object
crossSection_obj	cross section object as alternative input. default = NULL.
name	name of virtual cross section to use
spatial_network_name	name of spatial network to use
show_other_cells	display not selected cells
other_cell_color	color of cells outside the cross section. default = transparent.
default_save_name	default save name for saving, don’t change, change save_name in save_param
…	parameters for spatPlot3D()

Value

A ggplot.

Details

Description of parameters …