Show Sequential Processing Steps

showProcessingSteps()

Shows the sequential processing steps that were performed on a Giotto object in a summarized format.

showProcessingSteps(gobject)

Arguments

gobject

a giotto object

Value

A list of processing steps and names

Examples

data(mini_giotto_single_cell)

showProcessingSteps(mini_giotto_single_cell)
#> Processing steps:
#>
#>
#>  0_subset
#>
#>  1_filter
#>
#>  2_normalize
#>
#>  3_gene_stats
#>
#>  4_cell_stats
#>
#>  5_hvg
#>       name info:  hvg
#>
#>  6_pca
#>       name info:  pca
#>
#>  7_umap
#>       name info:  pca umap
#>
#>  8_tsne
#>       name info:  pca tsne
#>
#>  9_nn_network
#>       name info:  pca sNN.pca
#>
#>  10_cluster
#>       name info:  sNN.pca leiden_clus
#>
#>  11_grid
#>       name info:  spatial_grid
#>
#>  12_delaunay_spatial_network
#>       name info:  Delaunay_network
#>
#>  13_spatial_network
#>       name info:  kNN_network
#>
#>  14_create_metagene
#>       name info:  cluster_metagene