Filter ICGs

filterCPG()

Filter Interaction Changed Genes’ (ICGs) Scores .

filterCPG(...)

Arguments

…	Arguments passed on to filterICG()
cpgObject	ICG (interaction changed gene) score object
min_cells	minimum number of source cell type
min_cells_expr	minimum expression level for source cell type
min_int_cells	minimum number of interacting neighbor cell type
min_int_cells_expr	minimum expression level for interacting neighbor cell type
min_fdr	minimum adjusted p-value
min_spat_diff	minimum absolute spatial expression difference
min_log2_fc	minimum log2 fold-change
min_zscore	minimum z-score change
zscores_column	calculate z-scores over cell types or genes
direction	differential expression directions to keep

See also

filterICG().