Visualize ICGs via Barplot¶

plotInteractionChangedGenes()

Create barplot to visualize interaction changed genes.

plotInteractionChangedGenes(
    gobject,
    cpgObject,
    source_type,
    source_markers,
    ICG_genes,
    cell_color_code = NULL,
    show_plot = NA,
    return_plot = NA,
    save_plot = NA,
    save_param = list(),
    default_save_name = "plotInteractionChangedGenes"
)

Arguments¶

gobject	giotto object
cpgObject	ICG (interaction changed gene) score object
source_type	cell type of the source cell
source_markers	markers for the source cell type
ICG_genes	named character vector of ICG genes
cell_color_code	cell color code for the interacting cell types
show_plot	show plots
return_plot	return plotting object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters from all_plots_save_function()
default_save_name	default save name for saving, don’t change, change `save_name` in `save_param`

Value¶

A plot.