Visualize Combined ICG Scores¶

Create visualization for combined (pairwise) ICG scores.

plotCombineCellProximityGenes(...)

Arguments¶

…	Arguments passed on to plotCombineInteractionChangedGenes()
gobject	giotto object
combCpgObject	ICGscores, output from combineInteractionChangedGenes()
selected_interactions	interactions to show
selected_gene_to_gene	pairwise gene combinations to show
detail_plot	show detailed info in both interacting cell types
simple_plot	show a simplified plot
simple_plot_facet	facet on interactions or genes with simple plot
facet_scales	ggplot facet scales paramter
facet_ncol	ggplot facet ncol parameter
facet_nrow	ggplot facet nrow parameter
colors	vector with two colors to use
show_plot	show plots
return_plot	return plotting object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters from all_plots_save_function()
default_save_name	default save name for saving, don’t change, change save_name in save_param