Create Heatmap of Spatial Correlation

heatmSpatialCorGenes()

Create heatmap of spatially correlated genes.

heatmSpatialCorGenes(
    gobject,
    spatCorObject,
    use_clus_name = NULL,
    show_cluster_annot = TRUE,
    show_row_dend = T,
    show_column_dend = F,
    show_row_names = F,
    show_column_names = F,
    show_plot = NA,
    return_plot = NA,
    save_plot = NA,
    save_param = list(),
    default_save_name = "heatmSpatialCorGenes",
    ...
)

Arguments

gobject	giotto object
spatCorObject	spatial correlation object
use_clus_name	name of clusters to visualize (from clusterSpatialCorGenes())
show_cluster_annot	show cluster annotation on top of heatmap
show_row_dend	show row dendrogram
show_column_dend	show column dendrogram
show_row_names	show row names
show_column_names	show column names
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters, see showSaveParameters()
default_save_name	default save name for saving, don’t change, change save_name in save_param
…	additional parameters to the Heatmap function from ComplexHeatmap

Value

Returns a heatmap generated by ComplexHeatmap().