Rank Spatially Correlated Gene Clusters

rankSpatialCorGroups()

Rank spatial correlated clusters according to correlation structure.

rankSpatialCorGroups(
    gobject,
    spatCorObject,
    use_clus_name = NULL,
    show_plot = NA,
    return_plot = FALSE,
    save_plot = NA,
    save_param = list(),
    default_save_name = "rankSpatialCorGroups"
)

Arguments

gobject	giotto object
spatCorObject	spatial correlation object
use_clus_name	name of clusters to visualize (from clusterSpatialCorGenes())
show_plot	show plot
return_plot	return ggplot object
save_plot	directly save the plot [boolean]
save_param	list of saving parameters, see showSaveParameters()
default_save_name	default save name for saving, don’t change, change save_name in save_param

Value

A data.table with positive (within group) and negative (outside group) scores.