Show Spatially Correlated Genes

showSpatialCorGenes()

Shows and filters spatially correlated genes.

showSpatialCorGenes(
    spatCorObject,
    use_clus_name = NULL,
    selected_clusters = NULL,
    genes = NULL,
    min_spat_cor = 0.5,
    min_expr_cor = NULL,
    min_cor_diff = NULL,
    min_rank_diff = NULL,
    show_top_genes = NULL
)

Arguments

spatCorObject	spatial correlation object
use_clus_name	cluster information to show
selected_clusters	subset of clusters to show
genes	subset of genes to show
min_spat_cor	filter on minimum spatial correlation
min_expr_cor	filter on minimum single-cell expression correlation
min_cor_diff	filter on minimum correlation difference (spatial vs expression)
min_rank_diff	filter on minimum correlation rank difference (spatial vs expression)
show_top_genes	show top genes per gene

Value

A data.table with filtered information.