Calculate Gene Signature Enrichment Score¶
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extractNearestNetwork()
Function to calculate gene signature enrichment scores per spatial position using a rank based approach.
extractNearestNetwork(...)
Arguments¶
Arguments passed on to select_NearestNetwork().
gobject |
giotto object |
nn_network_to_use |
kNN or sNN |
network_name |
name of NN network to be used |
output |
return a igraph or data.table object |
See also